Cardiac Dynamics Lab

Below we list a selection of the main topics of the research group on Cardiac modelling. For more information you can alternatively visit our old web page of the Cardiac Dynamics Lab.


Cardiac alternans

Cardiac alternans is related to a periodic change in the duration of the action potential (APD), that typically occurs as the pacing rate is increased. The origin of alternans can lie in a modification of the dynamics of some transmembrane currents, that changes the cell's restitution properties (how fast it recovers after the end of an action potential), or in a dysfunction in intracellular calcium handling. If the amplitude of alternans becomes large, there can appear localized regions of tissue where the cells do not have enough to time to recover to elicit a new action potential. This can produce an instability of the electrical wave, in some cases resulting in the formation of reentry and the transition to a disordered electrical state, i.e., fibrillation. 


Modelling diffuse fibrosis

Arrhythmias in cardiac tissue are related to irregular electrical wave propagation in the heart. Some types of arrhythmias have been frequently related to fibrosis and ischemia of the tissue. Cardiac tissue is typically modeled with the continuous cable equations. However, tissues are formed by a discrete network of cells, which, normally, are far to be homogeneous. The inclusion of non-conducting media among the cells, mimicking cardiac fibrosis, in models of cardiac tissue may lead to the formation of reentries and other dangerous arrhythmias. A localized region with a fraction of non-conducting media surrounded by homogeneous conducting tissue can become a source of reentry and ectopic beats. The fraction of non-conducting media in comparison with the fraction of healthy myocytes and the topological distribution of the cells determines the probability of ectopic beat generation.
Contact: Sergio Alonso


Action potential wave instabilities

The propagation of the action potential through the tissue of the heart follows the cable equation, which can be interpreted as a complex reaction-diffusion system. While wave propagation is related to the usual electrical wave controlling the heart contraction, different types of more complex structures obtained from wave instabilities are related with cardiac re-entries, typically associated with cardiac arrhythmias. For the correct interpretation of such instabilities, reduction to simple models where the analytical studies are plausible, provides a good approach. We study different types of instabilities, including wave alternans, spiral wave breakup, and sproing and negative filament tension instabilities of three-dimensional scroll waves.
Contact: Blas Echebarria, Sergio Alonso


Calcium dynamics in myocytes

Calcium is the cellular messenger responsible for the contraction of the heart. In cardiac myocytes at rest most of it is stored in the sarcoplasmic reticulum (SR). During depolarization, calcium in the SR is released, as the channels in the SR membrane, the ryanodine receptors (RyR), open in response to the influx of calcium coming from the extracellular medium, in a process known as calcium induced calcium release (CICR). This produces a large increase in the calcium concentration in the cytosol, that reaches again its resting value under the action of the Na-Ca and SERCA pumps. Problems in calcium dynamics handling can give rise to a large number of pro-arrhythmic behaviors, such as electromechanical alternans, early and afterdepolarizations, etc. We are currently developing atrial and ventricular cell models to study the mechanisms responsible for these rhythms.    


Excitation-contraction coupling

The increase of calcium in the cytosol during an action potential drives the contraction of the cardiac cell. When the concentration at the cytosol arrives at the μM level, the cross bridge cycle starts through the coupling of calcium to the protein complex troponim C (TnC), finally resulting in the generation of force by the muscle fiber. The coupling is not one-directional, though. At the cell membrane there are ion channels activated by stretch, such that deformation modifies the electrical properties of tissue. This provides a bidirectional coupling between wave propagation and tissue contraction that can have an important effect on the dynamics of action potential propagation, resulting, for instance, on the appearance of self-oscillatory regions of tissue, a modification of the dynamics of alternans or the appearance of different dynamical instabilities, such a spiral break-up. 

Contact: Blas Echebarria, Enric Alvarez